Detailed information of SNP:
|
SNP ID:
sf0526279230(Gbrowse)
Chromosome: chr05 Position: 26279230 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1241 | 64.79% | 35.21% |
| All Indica | 629 | 43.72% | 56.28% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 290 | 38.62% | 61.38% |
| Indica II | 168 | 57.14% | 42.86% |
| Indica Intermediate | 171 | 39.18% | 60.82% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526279230 | C->T | INTERGENIC | None |