Detailed information of SNP:
|
SNP ID:
sf0526294089(Gbrowse)
Chromosome: chr05 Position: 26294089 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 52.20% | 47.80% |
| All Indica | 790 | 80.89% | 19.11% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 371 | 76.28% | 23.72% |
| Indica II | 211 | 78.67% | 21.33% |
| Indica Intermediate | 208 | 91.35% | 8.65% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526294089 | A->G | LOC_Os05g45430(LOC_Os05g45430.1) | UTR_3_PRIME |