Detailed information of SNP:
|
SNP ID:
sf0526310898(Gbrowse)
Chromosome: chr05 Position: 26310898 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 94.70% | 5.30% |
| All Indica | 794 | 98.99% | 1.01% |
| All Japonica | 424 | 86.08% | 13.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 275 | 97.82% | 2.18% |
| Tropical Japonica | 86 | 50.00% | 50.00% |
| Japonica Intermediate | 63 | 84.13% | 15.87% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526310898 | A->T | INTERGENIC | None |