Detailed information of SNP:
|
SNP ID:
sf0526311681(Gbrowse)
Chromosome: chr05 Position: 26311681 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.07% | 41.93% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 6.64% | 93.36% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526311681 | C->A | INTERGENIC | None |