Detailed information of SNP:
|
SNP ID:
sf0526312210(Gbrowse)
Chromosome: chr05 Position: 26312210 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 60.49% | 39.51% |
| All Indica | 795 | 90.82% | 9.18% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 211 | 71.09% | 28.91% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526312210 | G->A | LOC_Os05g45470(LOC_Os05g45470.1) | INTRON |
| sf0526312210 | G->A | LOC_Os05g45470(LOC_Os05g45470.1) | SNPs that disrupt splice sites |