Detailed information of SNP:
|
SNP ID:
sf0526312259(Gbrowse)
Chromosome: chr05 Position: 26312259 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.44% | 38.56% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 495 | 7.27% | 92.73% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 92 | 4.35% | 95.65% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526312259 | T->G | LOC_Os05g45470(LOC_Os05g45470.1) | INTRON |