Detailed information of SNP:
|
SNP ID:
sf0526336532(Gbrowse)
Chromosome: chr05 Position: 26336532 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1321 | 76.91% | 23.09% |
| All Indica | 795 | 94.84% | 5.16% |
| All Japonica | 404 | 37.62% | 62.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 82.86% | 17.14% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 263 | 40.68% | 59.32% |
| Tropical Japonica | 79 | 24.05% | 75.95% |
| Japonica Intermediate | 62 | 41.94% | 58.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526336532 | C->G | LOC_Os05g45550(LOC_Os05g45550.1) | Synonymous |