Detailed information of SNP:
|
SNP ID:
sf0526341417(Gbrowse)
Chromosome: chr05 Position: 26341417 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 77.79% | 22.21% |
| All Indica | 795 | 94.72% | 5.28% |
| All Japonica | 434 | 42.63% | 57.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 82.86% | 17.14% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 288 | 47.92% | 52.08% |
| Tropical Japonica | 83 | 24.10% | 75.90% |
| Japonica Intermediate | 63 | 42.86% | 57.14% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526341417 | T->G | INTERGENIC | None |