Detailed information of SNP:
|
SNP ID:
sf0526376503(Gbrowse)
Chromosome: chr05 Position: 26376503 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 51.36% | 48.64% |
| All Indica | 743 | 86.00% | 14.00% |
| All Japonica | 496 | 7.06% | 92.94% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 342 | 96.49% | 3.51% |
| Indica II | 207 | 70.05% | 29.95% |
| Indica Intermediate | 194 | 84.54% | 15.46% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526376503 | G->A | LOC_Os05g45620(LOC_Os05g45620.1) | Non-Synonymous SNP |