Detailed information of SNP:
|
SNP ID:
sf0526452318(Gbrowse)
Chromosome: chr05 Position: 26452318 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 87.97% | 12.03% |
| All Indica | 752 | 78.72% | 21.28% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 345 | 71.30% | 28.70% |
| Indica II | 203 | 84.24% | 15.76% |
| Indica Intermediate | 204 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526452318 | G->A | LOC_Os05g45779(LOC_Os05g45779.1) | INTRON |