Detailed information of SNP:
|
SNP ID:
sf0526453188(Gbrowse)
Chromosome: chr05 Position: 26453188 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 67.15% | 32.85% |
| All Indica | 797 | 94.10% | 5.90% |
| All Japonica | 467 | 16.27% | 83.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 316 | 10.44% | 89.56% |
| Tropical Japonica | 87 | 21.84% | 78.16% |
| Japonica Intermediate | 64 | 37.50% | 62.50% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526453188 | C->T | INTERGENIC | None |