Detailed information of SNP:
|
SNP ID:
sf0526600066(Gbrowse)
Chromosome: chr05 Position: 26600066 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.74% | 46.26% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 26.83% | 73.17% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526600066 | G->A | INTERGENIC | None |