Detailed information of SNP:
|
SNP ID:
sf0526615437(Gbrowse)
Chromosome: chr05 Position: 26615437 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.91% | 46.09% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526615437 | T->G | INTERGENIC | None |