Detailed information of SNP:
SNP ID:
sf0526633947(Gbrowse)
Chromosome: chr05 Position: 26633947 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 55.04% | 44.96% |
All Indica | 799 | 92.49% | 7.51% |
All Japonica | 497 | 0.80% | 99.20% |
Aus | 67 | 20.90% | 79.10% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 76.06% | 23.94% |
Indica Intermediate | 211 | 95.73% | 4.27% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 1.06% | 98.94% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 57.14% | 42.86% |
Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0526633947 | T->C | LOC_Os05g46030(LOC_Os05g46030.1) | INTRON |