Detailed information of SNP:
|
SNP ID:
sf0526662666(Gbrowse)
Chromosome: chr05 Position: 26662666 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1345 | 60.22% | 39.78% |
| All Indica | 728 | 31.04% | 68.96% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 342 | 26.32% | 73.68% |
| Indica II | 194 | 42.27% | 57.73% |
| Indica Intermediate | 192 | 28.12% | 71.88% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526662666 | G->C | INTERGENIC | None |