Detailed information of SNP:



SNP ID: sf0526662666(Gbrowse)

Chromosome: chr05

Position: 26662666
Major allele: G

Minor allele: C

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1345 60.22% 39.78%
All Indica728 31.04% 68.96%
All Japonica497 99.20% 0.80%
Aus66 87.88% 12.12%
Indica I342 26.32% 73.68%
Indica II194 42.27% 57.73%
Indica Intermediate192 28.12% 71.88%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic13 53.85% 46.15%
Intermediate41 63.41% 36.59%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0526662666 G->C INTERGENIC None