Detailed information of SNP:



SNP ID: sf0526786200(Gbrowse)

Chromosome: chr05

Position: 26786200
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 58.86% 41.14%
All Indica798 91.98% 8.02%
All Japonica497 1.01% 98.99%
Aus67 95.52% 4.48%
Indica I374 99.73% 0.27%
Indica II213 75.12% 24.88%
Indica Intermediate211 95.26% 4.74%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 85.71% 14.29%
Intermediate41 46.34% 53.66%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0526786200 T->C INTERGENIC None