Detailed information of SNP:
SNP ID:
sf0526786200(Gbrowse)
Chromosome: chr05 Position: 26786200 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1417 | 58.86% | 41.14% |
All Indica | 798 | 91.98% | 8.02% |
All Japonica | 497 | 1.01% | 98.99% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 374 | 99.73% | 0.27% |
Indica II | 213 | 75.12% | 24.88% |
Indica Intermediate | 211 | 95.26% | 4.74% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 1.06% | 98.94% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0526786200 | T->C | INTERGENIC | None |