Detailed information of SNP:
|
SNP ID:
sf0526842535(Gbrowse)
Chromosome: chr05 Position: 26842535 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 90.89% | 9.11% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 494 | 84.21% | 15.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 91 | 30.77% | 69.23% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526842535 | C->T | INTERGENIC | None |