Detailed information of SNP:
|
SNP ID:
sf0526843338(Gbrowse)
Chromosome: chr05 Position: 26843338 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 60.75% | 39.25% |
| All Indica | 795 | 87.04% | 12.96% |
| All Japonica | 487 | 22.38% | 77.62% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 327 | 30.28% | 69.72% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526843338 | G->A | INTERGENIC | None |