Detailed information of SNP:



SNP ID: sf0526856533(Gbrowse)

Chromosome: chr05

Position: 26856533
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1331 64.46% 35.54%
All Indica793 93.19% 6.81%
All Japonica474 14.98% 85.02%
Aus15 93.33% 6.67%
Indica I375 99.73% 0.27%
Indica II209 78.47% 21.53%
Indica Intermediate209 96.17% 3.83%
Temperate Japonica314 21.34% 78.66%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate66 3.03% 96.97%
Group VI/Aromatic13 92.31% 7.69%
Intermediate36 61.11% 38.89%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0526856533 A->C INTERGENIC None