Detailed information of SNP:
SNP ID:
sf0526856533(Gbrowse)
Chromosome: chr05 Position: 26856533 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1331 | 64.46% | 35.54% |
All Indica | 793 | 93.19% | 6.81% |
All Japonica | 474 | 14.98% | 85.02% |
Aus | 15 | 93.33% | 6.67% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 209 | 78.47% | 21.53% |
Indica Intermediate | 209 | 96.17% | 3.83% |
Temperate Japonica | 314 | 21.34% | 78.66% |
Tropical Japonica | 94 | 2.13% | 97.87% |
Japonica Intermediate | 66 | 3.03% | 96.97% |
Group VI/Aromatic | 13 | 92.31% | 7.69% |
Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0526856533 | A->C | INTERGENIC | None |