Detailed information of SNP:
|
SNP ID:
sf0526873375(Gbrowse)
Chromosome: chr05 Position: 26873375 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1254 | 96.49% | 3.51% |
| All Indica | 782 | 100.00% | 0.00% |
| All Japonica | 354 | 88.14% | 11.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 198 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 254 | 98.43% | 1.57% |
| Tropical Japonica | 57 | 50.88% | 49.12% |
| Japonica Intermediate | 43 | 76.74% | 23.26% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526873375 | G->A | INTERGENIC | None |