Detailed information of SNP:
|
SNP ID:
sf0526912365(Gbrowse)
Chromosome: chr05 Position: 26912365 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.68% | 44.32% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526912365 | G->T | INTERGENIC | None |