Detailed information of SNP:
|
SNP ID:
sf0526918608(Gbrowse)
Chromosome: chr05 Position: 26918608 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 82.70% | 17.30% |
| All Indica | 767 | 69.75% | 30.25% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 70.83% | 29.17% |
| Indica II | 205 | 68.78% | 31.22% |
| Indica Intermediate | 202 | 68.81% | 31.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526918608 | G->A | INTERGENIC | None |