Detailed information of SNP:
|
SNP ID:
sf0526918763(Gbrowse)
Chromosome: chr05 Position: 26918763 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 96.55% | 3.45% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 469 | 90.83% | 9.17% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 88.46% | 11.54% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526918763 | T->A | INTERGENIC | None |