Detailed information of SNP:
|
SNP ID:
sf0526923651(Gbrowse)
Chromosome: chr05 Position: 26923651 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 55.30% | 44.70% |
| All Indica | 796 | 31.66% | 68.34% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 32.53% | 67.47% |
| Indica II | 210 | 39.05% | 60.95% |
| Indica Intermediate | 211 | 22.75% | 77.25% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526923651 | A->T | INTERGENIC | None |