Detailed information of SNP:
|
SNP ID:
sf0526927086(Gbrowse)
Chromosome: chr05 Position: 26927086 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 63.40% | 36.60% |
| All Indica | 798 | 46.12% | 53.88% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 59.73% | 40.27% |
| Indica II | 212 | 42.45% | 57.55% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526927086 | A->C | INTERGENIC | None |