Detailed information of SNP:
|
SNP ID:
sf0526927096(Gbrowse)
Chromosome: chr05 Position: 26927096 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 68.06% | 31.94% |
| All Indica | 797 | 54.83% | 45.17% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 40.37% | 59.63% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526927096 | T->C | INTERGENIC | None |