Detailed information of SNP:
|
SNP ID:
sf0526928388(Gbrowse)
Chromosome: chr05 Position: 26928388 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 63.59% | 36.41% |
| All Indica | 797 | 46.17% | 53.83% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 59.63% | 40.37% |
| Indica II | 213 | 43.19% | 56.81% |
| Indica Intermediate | 210 | 25.24% | 74.76% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526928388 | G->A | INTERGENIC | None |