Detailed information of SNP:
|
SNP ID:
sf0526933446(Gbrowse)
Chromosome: chr05 Position: 26933446 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.31% | 40.69% |
| All Indica | 794 | 46.22% | 53.78% |
| All Japonica | 497 | 74.25% | 25.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 60.75% | 39.25% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 209 | 28.71% | 71.29% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526933446 | T->A | LOC_Os05g46630(LOC_Os05g46630.1) | INTRON |
| sf0526933446 | T->A | LOC_Os05g46630(LOC_Os05g46630.2) | INTRON |