Detailed information of SNP:
|
SNP ID:
sf0526933701(Gbrowse)
Chromosome: chr05 Position: 26933701 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 66.93% | 33.07% |
| All Indica | 796 | 52.01% | 47.99% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 60.96% | 39.04% |
| Indica II | 212 | 57.08% | 42.92% |
| Indica Intermediate | 210 | 30.95% | 69.05% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526933701 | C->T | LOC_Os05g46630(LOC_Os05g46630.1) | INTRON |
| sf0526933701 | C->T | LOC_Os05g46630(LOC_Os05g46630.2) | INTRON |