Detailed information of SNP:
|
SNP ID:
sf0526970574(Gbrowse)
Chromosome: chr05 Position: 26970574 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 84.31% | 15.69% |
| All Indica | 770 | 73.12% | 26.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 359 | 64.90% | 35.10% |
| Indica II | 206 | 86.89% | 13.11% |
| Indica Intermediate | 205 | 73.66% | 26.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526970574 | C->A | LOC_Os05g46700(LOC_Os05g46700.1) | Synonymous |