Detailed information of SNP:
|
SNP ID:
sf0526970741(Gbrowse)
Chromosome: chr05 Position: 26970741 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 70.88% | 29.12% |
| All Indica | 791 | 51.71% | 48.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 370 | 38.65% | 61.35% |
| Indica II | 210 | 67.14% | 32.86% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526970741 | C->T | LOC_Os05g46700(LOC_Os05g46700.1) | Non-Synonymous SNP |