Detailed information of SNP:
|
SNP ID:
sf0527018337(Gbrowse)
Chromosome: chr05 Position: 27018337 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1219 | 83.84% | 16.16% |
| All Indica | 642 | 83.18% | 16.82% |
| All Japonica | 495 | 85.45% | 14.55% |
| Aus | 30 | 66.67% | 33.33% |
| Indica I | 305 | 86.23% | 13.77% |
| Indica II | 157 | 85.35% | 14.65% |
| Indica Intermediate | 180 | 76.11% | 23.89% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 93 | 41.94% | 58.06% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527018337 | T->C | INTERGENIC | None |