Detailed information of SNP:
|
SNP ID:
sf0527050197(Gbrowse)
Chromosome: chr05 Position: 27050197 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1345 | 68.55% | 31.45% |
| All Indica | 762 | 85.04% | 14.96% |
| All Japonica | 469 | 39.87% | 60.13% |
| Aus | 61 | 72.13% | 27.87% |
| Indica I | 355 | 85.07% | 14.93% |
| Indica II | 209 | 83.73% | 16.27% |
| Indica Intermediate | 198 | 86.36% | 13.64% |
| Temperate Japonica | 312 | 20.19% | 79.81% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 66 | 54.55% | 45.45% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527050197 | C->T | LOC_Os05g46810(LOC_Os05g46810.1) | Synonymous |