Detailed information of SNP:
|
SNP ID:
sf0527059380(Gbrowse)
Chromosome: chr05 Position: 27059380 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.14% | 40.86% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 495 | 13.74% | 86.26% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 52.17% | 47.83% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527059380 | T->C | LOC_Os05g46840(LOC_Os05g46840.1) | UTR_5_PRIME |