Detailed information of SNP:
|
SNP ID:
sf0527063275(Gbrowse)
Chromosome: chr05 Position: 27063275 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 86.86% | 13.14% |
| All Indica | 797 | 90.72% | 9.28% |
| All Japonica | 496 | 88.91% | 11.09% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527063275 | T->G | LOC_Os05g46860(LOC_Os05g46860.1) | INTRON |