Detailed information of SNP:
|
SNP ID:
sf0527090466(Gbrowse)
Chromosome: chr05 Position: 27090466 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 95.19% | 4.81% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527090466 | G->A | LOC_Os05g46920(LOC_Os05g46920.1) | INTRON |