Detailed information of SNP:
|
SNP ID:
sf0527111164(Gbrowse)
Chromosome: chr05 Position: 27111164 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 98.44% | 1.56% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 490 | 97.55% | 2.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 91.01% | 8.99% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527111164 | C->T | INTERGENIC | None |