Detailed information of SNP:
|
SNP ID:
sf0527121242(Gbrowse)
Chromosome: chr05 Position: 27121242 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 60.17% | 39.83% |
| All Indica | 796 | 89.45% | 10.55% |
| All Japonica | 493 | 16.63% | 83.37% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 210 | 82.86% | 17.14% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 92 | 65.22% | 34.78% |
| Japonica Intermediate | 66 | 22.73% | 77.27% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527121242 | T->C | INTERGENIC | None |