Detailed information of SNP:
|
SNP ID:
sf0527200661(Gbrowse)
Chromosome: chr05 Position: 27200661 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 63.73% | 36.27% |
| All Indica | 799 | 49.56% | 50.44% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 375 | 30.67% | 69.33% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527200661 | A->G | INTERGENIC | None |