Detailed information of SNP:
|
SNP ID:
sf0527202524(Gbrowse)
Chromosome: chr05 Position: 27202524 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 94.69% | 5.31% |
| All Indica | 794 | 96.73% | 3.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 27.27% | 72.73% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 88.52% | 11.48% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527202524 | G->A | LOC_Os05g47590(LOC_Os05g47590.1) | Synonymous |