Detailed information of SNP:
|
SNP ID:
sf0527203029(Gbrowse)
Chromosome: chr05 Position: 27203029 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 68.55% | 31.45% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 23.14% | 76.86% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527203029 | G->A | LOC_Os05g47590(LOC_Os05g47590.1) | Non-Synonymous SNP |