Detailed information of SNP:
|
SNP ID:
sf0527204992(Gbrowse)
Chromosome: chr05 Position: 27204992 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1340 | 68.36% | 31.64% |
| All Indica | 758 | 96.17% | 3.83% |
| All Japonica | 496 | 22.58% | 77.42% |
| Aus | 31 | 93.55% | 6.45% |
| Indica I | 354 | 97.46% | 2.54% |
| Indica II | 203 | 94.09% | 5.91% |
| Indica Intermediate | 201 | 96.02% | 3.98% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527204992 | C->T | INTERGENIC | None |