Detailed information of SNP:
|
SNP ID:
sf0527208502(Gbrowse)
Chromosome: chr05 Position: 27208502 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1331 | 77.24% | 22.76% |
| All Indica | 761 | 93.96% | 6.04% |
| All Japonica | 494 | 51.01% | 48.99% |
| Aus | 26 | 80.77% | 19.23% |
| Indica I | 350 | 94.29% | 5.71% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 201 | 94.03% | 5.97% |
| Temperate Japonica | 334 | 39.22% | 60.78% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 9 | 33.33% | 66.67% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527208502 | T->C | INTERGENIC | None |