Detailed information of SNP:
|
SNP ID:
sf0527219424(Gbrowse)
Chromosome: chr05 Position: 27219424 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1262 | 87.80% | 12.20% |
| All Indica | 734 | 83.79% | 16.21% |
| All Japonica | 457 | 96.72% | 3.28% |
| Aus | 25 | 44.00% | 56.00% |
| Indica I | 357 | 83.75% | 16.25% |
| Indica II | 181 | 83.43% | 16.57% |
| Indica Intermediate | 196 | 84.18% | 15.82% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 67 | 85.07% | 14.93% |
| Japonica Intermediate | 57 | 96.49% | 3.51% |
| Group VI/Aromatic | 9 | 66.67% | 33.33% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527219424 | A->C | LOC_Os05g47610(LOC_Os05g47610.1) | INTRON |