Detailed information of SNP:
|
SNP ID:
sf0527221743(Gbrowse)
Chromosome: chr05 Position: 27221743 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 69.43% | 30.57% |
| All Indica | 791 | 53.35% | 46.65% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 35.41% | 64.59% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 209 | 56.94% | 43.06% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527221743 | C->A | INTERGENIC | None |