Detailed information of SNP:
|
SNP ID:
sf0527227408(Gbrowse)
Chromosome: chr05 Position: 27227408 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.72% | 41.28% |
| All Indica | 797 | 35.01% | 64.99% |
| All Japonica | 497 | 88.73% | 11.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 27.81% | 72.19% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 210 | 26.19% | 73.81% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527227408 | C->T | INTERGENIC | None |