Detailed information of SNP:
|
SNP ID:
sf0527295251(Gbrowse)
Chromosome: chr05 Position: 27295251 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.54% | 14.46% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 71.70% | 28.30% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527295251 | G->A | INTERGENIC | None |