Detailed information of SNP:
|
SNP ID:
sf0527298970(Gbrowse)
Chromosome: chr05 Position: 27298970 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 94.61% | 5.39% |
| All Indica | 793 | 95.71% | 4.29% |
| All Japonica | 494 | 92.51% | 7.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 209 | 87.56% | 12.44% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 70.65% | 29.35% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527298970 | A->G | LOC_Os05g47770(LOC_Os05g47770.1) | Non-Synonymous SNP |