Detailed information of SNP:
|
SNP ID:
sf0527298997(Gbrowse)
Chromosome: chr05 Position: 27298997 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 93.19% | 6.81% |
| All Indica | 789 | 91.38% | 8.62% |
| All Japonica | 487 | 95.07% | 4.93% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 204 | 88.24% | 11.76% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 79.78% | 20.22% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527298997 | G->A | LOC_Os05g47770(LOC_Os05g47770.1) | Non-Synonymous SNP |