Detailed information of SNP:
|
SNP ID:
sf0527306107(Gbrowse)
Chromosome: chr05 Position: 27306107 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 85.24% | 14.76% |
| All Indica | 797 | 90.21% | 9.79% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 72.17% | 27.83% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527306107 | T->C | INTERGENIC | None |